Hi again,

For some reason I didn't get your reply http://lists.macromates.com/textmate/2014-February/037134.html yet (I'm assuming I'll get it with the digest).

About supporting Rmd/rmd files, I just recently finished the set of proposed changes to the redcarpet-markdown bundle https://github.com/streeter/markdown-redcarpet.tmbundle/pull/7 I thought that would be the best bundle for these changes since it is specialized to the Github flavored markdown.

Taking a look at https://github.com/tbates/markdown.tmbundle I see that you have made many edits to the markdown bundle for getting table headings highlighted, mathjax support, etc. 

If you use the proposed "knit to html with knitr" or "knit to html with knitrBootstrap" in https://github.com/streeter/markdown-redcarpet.tmbundle/pull/7 mathjax is supported (in the output) and you can include jQuery (like here).

I'm not the expert on redcarpet markdown, but maybe adding some of your features in https://github.com/tbates/markdown.tmbundle to https://github.com/streeter/markdown-redcarpet.tmbundle is a good idea. That's why I'm cling the maintainer of the markdown-redcarpet bundle.

Cheers,
Leo






On Thu, Feb 20, 2014 at 12:00 PM, Leonardo Collado Torres <lcollado@jhsph.edu> wrote:
Thank you again Tim Bates! I finally understood what you meant and managed to fix the menu. https://github.com/fonnesbeck/knitr.tmbundle/pull/2

Cheers,
Leo


On Wed, Feb 19, 2014 at 10:44 PM, Leonardo Collado Torres <lcollado@jhsph.edu> wrote:
Hello again,

Thank you for the replies! I'm sorry, but I had disabled emails from this list and forgotten about it. But hopefully, this  reply will still connect to the thread http://lists.macromates.com/textmate/2014-February/037121.html


Going back to the issue at hand, if I understood your reply correctly you are suggesting starting over. Which from looking at https://github.com/fonnesbeck/knitr.tmbundle/commits/master it would basically involve the commits by fonneseck from June 21, 2012 on forward.


As for uuid's on the plist that are not on the bundle, I tried finding all of those that were only on the plist and removing them as described earlier (use https://gist.github.com/lcolladotor/9077862) but that didn't work out either.


Thank you,
Leonardo

PS I've proposed changes to the markdown-redcarpet.tmbundle to integrate R markdown files: https://github.com/streeter/markdown-redcarpet.tmbundle/pull/7 Once the knitr.tmbundle (which is for Rnw files) is done, I plan on summarizing how to get a full R + textmate + knitr setup. 




On Tue, Feb 18, 2014 at 2:26 PM, Leonardo Collado Torres <lcollado@jhsph.edu> wrote:
Hello Textmate list,

I am trying to understand why the knitr.tmbundle is not showing all the commands in the bundle menu as shown below:

Inline image 1

It's missing a few commands there, such as "Knit in R". You can try it out yourself by installing it:

$ cd ~/Library/Application Support/Avian/Bundles
$ git clone git@github.com:lcolladotor/knitr.tmbundle.git

Note that https://github.com/lcolladotor/knitr.tmbundle is forked from https://github.com/fonnesbeck/knitr.tmbundle as I tried to fix some other minor issues (uuid conflicts with SWeave bundle, ^< shortcut for "insert code chunk" macro). The original repo is https://github.com/textmate/sweave.tmbundle

The menu is incomplete regardless of whether the SWeave bundle is installed or not.

I tried playing around with the .plist file after reading http://superuser.com/questions/380371/how-do-i-create-a-new-snippet-in-textmate-2 leading to https://gist.github.com/9077862 but that didn't work either. 

Any tips on how to fix the menu will be greatly appreciated! Right now the only thing that comes to mind is using the Bundle creator GUI and re-making the commands, but that sounds like the last option to take.


I'm using TextMate 2.0-alpha.9503 on a Mac with OS X 10.8.5.

Thank you,
Leonardo

Leonardo Collado Torres, PhD student
Department of Biostatistics
Johns Hopkins University
Bloomberg School of Public Health