Great! I didn't notice that the latest version has supported bundle editor, I used to change bundle configurations directly, that explains why my changes were overwritten.

Thanks/

On Sunday, July 6, 2014, Allan Odgaard <mailinglist@textmate.org> wrote:
On 5 Jul 2014, at 5:29, Kelvin Wu wrote:

I am using TextMate 2. I mad some changes in some bundles to suit my
individual needs, but these changes are all gone once bundles are
auto-updated. Is there a way to keep local changes when a bundle is
updating itself?

If you edit bundles via the bundle editor then your changes are stored as delta files in ~/Library/Application Support/Avian/Bundles.

When updating a bundle, TextMate does not touch these delta files, only files in ~/Libary/Application Support/TextMate/Managed are replaced.

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